Proline Dipeptidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Proline Dipeptidase
  Conformer 1
(PDB) 		4r60 (A)
  Conformer 2
(PDB) 		4r60 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 249 0.27   5 - 26   165 - 165   172 - 397
2 144 0.2   27 - 164   166 - 171

Sequence


           _______________________26_______________________________________________________________________________________________ 
 4r60(A) : *TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQ 
         :                                                                                                                          
 4r60(B) : STQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQ 
           _______________________26_______________________________________________________________________________________________ 

           ________________________________________164____171______________________________________________________________________ 
 4r60(A) : AMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQH 
         :                                                                                                                          
 4r60(B) : AMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQH 
           ________________________________________164____171______________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4r60(A) : LRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEP 
         :                                                                                                                          
 4r60(B) : LRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEP 
           ________________________________________________________________________________________________________________________ 

           ______________________________________                                                                                   
 4r60(A) : MIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA                                                                                   
         :                                                                                                                          
 4r60(B) : MIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA                                                                                   
           ______________________________________                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.0
Translation
(A) 		-0.1
Closure
(%) 		12.1
Bending Residues
( green ) 		  26 - 27
  164 - 166
  171 - 172
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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