S-Adenosylhomocysteine Hydrolase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name S-Adenosylhomocysteine Hydrolase
  Conformer 1
(PDB) 		1b3r (A)
  Conformer 2
(PDB) 		1d4f (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 225 0.64   6 - 186   355 - 395   397 - 397   400 - 400   427 - 427
2 168 0.54   187 - 354
3 31 1.03   396 - 396   398 - 399   401 - 426   428 - 429

Sequence


           ________________________________________________________________________________________________________________________ 
 1b3r(A) : **LPYKVADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKD 
         :                                                                                                                          
 1d4f(D) : DKLPYKVADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKD 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________185________________________________________________________ 
 1b3r(A) : GPLNMILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIIT 
         :                                                                                                                          
 1d4f(D) : GPLNMILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIIT 
           _____________________________________________________________185________________________________________________________ 

           ______________________________________________________________________________________________________________354_______ 
 1b3r(A) : EIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSF 
         :                                                                                                                          
 1d4f(D) : EIEPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSF 
           ______________________________________________________________________________________________________________354_______ 

           _______________________________395___________________________425______                                                   
 1b3r(A) : TNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY                                                   
         :                                                                                                                          
 1d4f(D) : TNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY                                                   
           _______________________________395___________________________425______                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.7
Translation
(A) 		0.2
Closure
(%) 		100.0
Bending Residues
( green ) 		  185 - 191
  354 - 355
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		20.6
Translation
(A) 		0.2
Closure
(%) 		92.7
Bending Residues
( green ) 		  395 - 401
  425 - 429
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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