Tryptophan Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophan Synthase
  Conformer 1
(PDB) 		1bks (B)
  Conformer 2
(PDB) 		1qoq (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 333 0.33   5 - 104   117 - 129   145 - 155   184 - 392
2 55 0.49   105 - 116   130 - 144   156 - 183

Sequence


           ____________________________________________________________________________________________________104_________116_____ 
 1bks(B) : *TLLNPYFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASAL 
         :                                                                                                                          
 1qoq(B) : TTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASAL 
           ____________________________________________________________________________________________________104_________116_____ 

           _____129____________144________155_________________________183__________________________________________________________ 
 1bks(B) : ASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 
         :                                                                                                                          
 1qoq(B) : ASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALADWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 
           _____129____________144________155_________________________183__________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1bks(B) : ADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKM 
         :                                                                                                                          
 1qoq(B) : ADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKM 
           ________________________________________________________________________________________________________________________ 

           __________________________________                                                                                       
 1bks(B) : MREQPEKEQLLVVNLSGRGDKDIFTVHDILKAR*                                                                                       
         :                                                                                                                          
 1qoq(B) : MREQPEKEQLLVVNLSGRGDKDIFTVHDILKARG                                                                                       
           __________________________________                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.7
Translation
(A) 		0.2
Closure
(%) 		100.0
Bending Residues
( green ) 		  104 - 105
  116 - 117
  129 - 130
  144 - 145
  155 - 156
  183 - 184
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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