Udp-2,3-Diacylglucosamine Pyrophosphatase Lpxi

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-2,3-Diacylglucosamine Pyrophosphatase Lpxi
  Conformer 1
(PDB) 		4ggm (X)
  Conformer 2
(PDB) 		4j6e (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 141 1.43   127 - 274
2 121 1.23   4 - 126

Sequence


           ________________________________________________________________________________________________________________________ 
 4ggm(X) : *RKLGLIAGGGALPVELASHCEAAGRAFAV-rLRSFADPSLDRYPGADVGIGEFGKIFKALRAEGCDVVCFAGNVSRPDFSAL-pDARGLKVLPSLIVAARKGDDALLRRVLDEFEKEGF 
         :                                                                                                                          
 4j6e(A) : MRKLGLIAGGGALPVELASHCEAAGRAFAVMRLRSFADPSLDRYPGADVGIGEFGKIFKALRAEGCDVVCFAGNVSRPDFSALMPDARGLKVLPSLIVAARKGDDALLRRVLDEFEKEGF 
           ________________________________________________________________________________________________________________________ 

           __125___________________________________________________________________________________________________________________ 
 4ggm(X) : EIEGAHEV-gE-tLPRGRLGKVSPAPEH-aDIDKALDVAREIGRLDIGQGAVVCEGLVLAVEAQEGTDA-lRRVADLPEAIRGRAERRLGVLAKAPKPIQETRVDLPTIGVATIHRAARA 
         :                                                                                                                          
 4j6e(A) : EIEGAHEVMGEMTLPRGRLGKVSPAPEHMADIDKALDVAREIGRLDIGQGAVVCEGLVLAVEAQEGTDAMLRRVADLPEAIRGRAERRLGVLAKAPKPI---rVALPTIGVATIHRAARA 
           __125___________________________________________________________________________________________________________________ 

           _____________________________________                                                                                    
 4ggm(X) : GLAGIVGEAGRLLVVDREAVIAAADDLGLFVLGVDPQ                                                                                    
         :                                                                                                                          
 4j6e(A) : GLAGIVGEAGRLLVVDREAVIAAADDLGLFVLGVDP*                                                                                    
           _____________________________________                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		116.5
Translation
(A) 		5.6
Closure
(%) 		82.8
Bending Residues
( green ) 		  125 - 131
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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