Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2
  Conformer 1
(PDB) 		4u2r (B)
  Conformer 2
(PDB) 		4u2r (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 157 0.33   4 - 111   194 - 198   216 - 259
2 99 0.24   112 - 193   199 - 215

Sequence


           ____________________________________________________________________________________________________________111_________ 
 4u2r(B) : GANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
         :                                                                                                                          
 4u2r(C) : *ANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
           ____________________________________________________________________________________________________________111_________ 

           ______________________________________________________________________193__198______________215_________________________ 
 4u2r(B) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLK 
         :                                                                                                                          
 4u2r(C) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLK 
           ______________________________________________________________________193__198______________215_________________________ 

           _______________________                                                                                                  
 4u2r(B) : LSEQGVLDKLKNKWWYDKGECGS                                                                                                  
         :                                                                                                                          
 4u2r(C) : LSEQGVLDKLKNKWWYDKGEC**                                                                                                  
           _______________________                                                                                                  

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.2
Translation
(A) 		0.0
Closure
(%) 		99.3
Bending Residues
( green ) 		  111 - 112
  193 - 194
  198 - 201
  215 - 216
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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