Glutamate--Trna Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate--Trna Ligase
  Conformer 1
(PDB) 		5tgt (A)
  Conformer 2
(PDB) 		1g59 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 305 1.74   5 - 340
2 125 2.91   341 - 470

Sequence


           ________________________________________________________________________________________________________________________ 
 5tgt(A) : TTVRTRIAPSPTGDPHVGTAYIALFNLCFARQHGGQFILRIEDTDQLRSTRESEQQIYDALRWLGIEWDEGPDVGGPHGPYRQSERGHIYKKYSDELVEKGHAFTCFm------------ 
         :                                                                                                                          
 1g59(A) : *MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5tgt(A) : --------HLPKDEVQRRLAAGESHVTRMKVPTEGVCVVPDMLRGDVEIPWDRMDMQVLMKADGLPTYFLANVVDDHLMGITHVLRGEEWLPSAPKLIKLYEYFGWEQPQLCYMPLLRNP 
         :                                                                                                                          
 1g59(A) : GGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNP 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________338____________________________ 
 5tgt(A) : DKSKLSKRKNPTSITFYERMGYLPQALLNYLGRMGWS-----eKFTLAEMIEHFDLSRVSLGGPIFDLEKLSWLNGQWIRE-QSVEEFAREVQ--------KWALNPEYLMKIAPHVQGR 
         :                                                                                                                          
 1g59(A) : DKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWE-SEAYLRRAVELMRPR 
           _________________________________________________________________________________________331____________________________ 

           ________________________________________________________________________________________________________________________ 
 5tgt(A) : VENFSQIAPLAGFFFSGGVPLDASLFEHKKLDPTQVRQVLQLVLWKLESLRQWEKERITGCIQAVAEHLQLKLRDVMPLMFPAITGHASSVSVLDAMEILGADLSRYRLRQALELLGGAS 
         :                                                                                                                          
 1g59(A) : FDTLKEFPEKARYLFTEDYPVSEK--AQRKLEEGL--PLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLERALA****** 
           ________________________________________________________________________________________________________________________ 

           _______________                                                                                                          
 5tgt(A) : KKETKEWEKIRDAIP                                                                                                          
         :                                                                                                                          
 1g59(A) : ***************                                                                                                          
           _______________                                                                                                          

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		178.2
Translation
(A) 		-5.7
Closure
(%) 		75.5
Bending Residues
( green ) 		  338 - 344
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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