Homoserine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Homoserine Dehydrogenase
  Conformer 1
(PDB) 		1ebf (A)
  Conformer 2
(PDB) 		1ebf (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 241 0.92   6 - 172   220 - 242   289 - 289   291 - 300   315 - 318   322 - 357
2 111 0.56   173 - 219   243 - 288   290 - 290   301 - 314   319 - 321

Sequence


           ________________________________________________________________________________________________________________________ 
 1ebf(A) : STKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFS 
         :                                                                                                                          
 1ebf(B) : STKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________172____________________________________________219____________________24 
 1ebf(A) : SDLATWKALFSNKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSF 
         :                                                                                                                          
 1ebf(B) : SDLATWKALFSNKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSF 
           ________________________________________________172____________________________________________219____________________24 

           2___________________________________________288_________300__________313_317_321______________________________________   
 1ebf(A) : PVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRYTNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL   
         :                                                                                                                          
 1ebf(B) : PVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRYTNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL   
           2___________________________________________288_________300__________313_317_321______________________________________   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.8
Translation
(A) 		0.1
Closure
(%) 		66.7
Bending Residues
( green ) 		  172 - 173
  219 - 220
  242 - 243
  288 - 291
  300 - 301
  313 - 315
  317 - 319
  321 - 322
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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