Lactoferrin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lactoferrin
  Conformer 1
(PDB) 		1dsn  
  Conformer 2
(PDB) 		1eh3 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 156 0.41   58 - 64   92 - 215   226 - 250
2 146 0.63   7 - 57   65 - 91   216 - 225   251 - 308

Sequence


           ______________________________________________________57_____64_________________________91______________________________ 
 1dsn    : RRRSVQWCAVSQPEATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLSGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGLRR 
         :                                                                                                                          
 1eh3(A) : **RSVQWCAVSQPEATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGLRR 
           ______________________________________________________57_____64_________________________91______________________________ 

           __________________________________________________________________________________________214________225________________ 
 1dsn    : TAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDEYELLCPDNTRKPVDK 
         :                                                                                                                          
 1eh3(A) : TAGWNVPIGTLRPFLDWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIKESTVFEDLSDEAERDEYELLCPDNTRKPVDK 
           __________________________________________________________________________________________214________225________________ 

           ______250_____________________________________________________________________________                                   
 1dsn    : FKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDS***********                                   
         :                                                                                                                          
 1eh3(A) : FKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTA                                   
           ______250_____________________________________________________________________________                                   

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.9
Translation
(A) 		-0.1
Closure
(%) 		9.7
Bending Residues
( green ) 		  57 - 58
  64 - 75
  91 - 93
  214 - 216
  225 - 226
  250 - 251
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download