Myosin Essential Light Chain,striated Adductor Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Myosin Essential Light Chain,striated Adductor Muscle
  Conformer 1
(PDB) 		1kk8 (C)
  Conformer 2
(PDB) 		1kk7 (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 40 5.69   16 - 39   70 - 85
2 30 8.96   40 - 69

Sequence


           ________________________________________________________________________________________________________________________ 
 1kk8(C) : ************************************************************************************************************************ 
         :                                                                                                                          
 1kk7(A) : FSDPDFQYLAVDRKKLMKaAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kk8(C) : ************************************************************************************************************************ 
         :                                                                                                                          
 1kk7(A) : RLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKeEASDKgSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________39_________________ 
 1kk8(C) : ****************************************************************PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTH 
         :                                                                                                                          
 1kk7(A) : FGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEE-FKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKpREEQ 
           ____________________________________________________________________________________________________352_________________ 

           ___________69___________________________________________________________________________________________________________ 
 1kk8(C) : KMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYP********************** 
         :                                                                                                                          
 1kk7(A) : AESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVeMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKArNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFI 
           __________384___________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kk8(C) : ************************************************************************************************************************ 
         :                                                                                                                          
 1kk7(A) : LEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kk8(C) : ************************************************************************************************************************ 
         :                                                                                                                          
 1kk7(A) : EPLVAELFKAPEEqTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPdGKTVSEKILAGLQMDPAEY 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________                                     
 1kk8(C) : ************************************************************************************                                     
         :                                                                                                                          
 1kk7(A) : RLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL                                     
           ____________________________________________________________________________________                                     

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		129.6
Translation
(A) 		-2.6
Closure
(%) 		99.7
Bending Residues
( green ) 		  39 - 40
  69 - 72
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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