Phnd, Subunit Of Alkylphosphonate Abc Transporter

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phnd, Subunit Of Alkylphosphonate Abc Transporter
  Conformer 1
(PDB) 		3p7i (A)
  Conformer 2
(PDB) 		3qk6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 265 0.44   7 - 265   292 - 301
2 21 0.75   267 - 291

Sequence


           ________________________________________________________________________________________________________________________ 
 3p7i(A) : KALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGD 
         :                                                                                                                          
 3qk6(A) : KALNFGIISTESQQNLKPQWTPFLQD-eKKLGVKVNAFFAPDYAGIIQG-rFNKVDIAWYGNLSA-eAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3p7i(A) : PNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLGWA 
         :                                                                                                                          
 3qk6(A) : PNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFF-nYGKTPEEKAVLERLGWA 
           ________________________________________________________________________________________________________________________ 

           _________________264________________________291____________________                                                      
 3p7i(A) : PFRASSDLQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALSAM*******                                                      
         :                                                                                                                          
 3qk6(A) : PFRASSDLQLVPIRQLALFKE-qSVKDN----eQDKLAKTTAIQAQLDDLDRLNNALSAsSVSKAVQ                                                      
           _________________264________________________291____________________                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.7
Translation
(A) 		-0.1
Closure
(%) 		21.1
Bending Residues
( green ) 		  264 - 267
  291 - 301
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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