Poly(a) RNA Polymerase Protein Cid1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Poly(a) RNA Polymerase Protein Cid1
  Conformer 1
(PDB) 		4e8f (A)
  Conformer 2
(PDB) 		4e8f (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 238 2.25   40 - 69   88 - 102   165 - 378
2 77 1.11   70 - 87   103 - 164

Sequence


           ____________________________67__________________87______________________________________________________________________ 
 4e8f(A) : PNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSsDTIALQFYEELIAEGFEGKFLQRARIPIIKLTSDTKNGFGASFQCD 
         :                                                                                                                          
 4e8f(B) : PNSHKEFTKFCYEVYNEIKI-------kRAALDTLRLCLKRISPDAELVAF-sLESGLALKNSDMDLCVLMDSRdTIALQFYEELIAEGFEGKFLQRARIPIIKLTSDTKNGFGASFQCD 
           ____________________________67__________________87______________________________________________________________________ 

           163_____________________________________________________________________________________________________________________ 
 4e8f(A) : IGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYA 
         :                                                                                                                          
 4e8f(B) : IGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYA 
           163_____________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________                                  
 4e8f(A) : YKFEPREKVVTFRRPDGYLTKQEKGWTSdRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEAPIP                                  
         :                                                                                                                          
 4e8f(B) : YKFEPREKVVTFRRPDGYLTKQEKGWTSdRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEAPIP                                  
           _______________________________________________________________________________________                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		37.6
Translation
(A) 		-4.6
Closure
(%) 		92.9
Bending Residues
( green ) 		  67 - 72
  87 - 104
  163 - 166
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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