Probable Transcriptional Repressor Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Transcriptional Repressor Protein
  Conformer 1
(PDB) 		4fx0 (B)
  Conformer 2
(PDB) 		4fx4 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 46 0.39   22 - 48   100 - 118
2 25 0.55   62 - 87
3 20 0.72   126 - 145

Sequence


           ________________________________________47___________________________________87___________________________118___________ 
 4fx0(B) : AFDECACYTTRRAARQLGQAYDRALRPSGLTNTQFSTLAVISLSEgIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM---AGcKRIELTAKGRAALQKAVPLWRGVQAEVTASVGD 
         :                                                                                                                          
 4fx4(B) : ***ECACYTTRRAARQLGQAYDRALRPSGLTNTQFSTLAVISLSt------sELAARIGVERTTLTRNLEV-rRDGLVRVaGADARCKRIELTAKGRAALQKAVPLWRGVQAEVTASVGD 
           ________________________________________47___________________________________87___________________________118___________ 

           ____________________                                                                                                     
 4fx0(B) : WPRVRRDIANLGQAAEAC**                                                                                                     
         :                                                                                                                          
 4fx4(B) : WPRVRRDIANLGQAAEACRL                                                                                                     
           ____________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.6
Translation
(A) 		-0.2
Closure
(%) 		65.9
Bending Residues
( green ) 		  47 - 62
  87 - 100
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		12.6
Translation
(A) 		0.9
Closure
(%) 		99.1
Bending Residues
( green ) 		  118 - 129
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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