Putative Iron Compound-Binding Protein Of Abc Transporter Family

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Iron Compound-Binding Protein Of Abc Transporter Family
  Conformer 1
(PDB) 		3be5 (A)
  Conformer 2
(PDB) 		3be5 (D)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 151 0.36   22 - 170   173 - 174
2 132 0.56   171 - 172   175 - 309

Sequence


           ________________________________________________________________________________________________________________________ 
 3be5(A) : EPVQVFTDDLGRKVTVPAHPKRIVSLHDLDITIPLIELGVPPVASHGRTRPDGSHFIRSGALLTGVDFDNSSIAFIGTADIDIEAIVAAKPDLIITEPTRNTPIERLEKIAPTVSIDHLK 
         :                                                                                                                          
 3be5(D) : EPVQVFTDDLGRKVTVPAHPKRIVSLHDLDITIPLIELGVPPVASHGRTRPDGSHFIRSGALLTGVDFDNSSIAFIGTADIDIEAIVAAKPDLIITEPTRNTPIERLEKIAPTVSIDHLK 
           ________________________________________________________________________________________________________________________ 

           ___________________________168__________________________________________________________________________________________ 
 3be5(A) : GGAPEIYRKLAELTGTQSQLAILERRYQAQINALKATLDSQKITVSVIQANQGKINVhSYHSLGRVLRDAGFRFPPLIESIPEGGRdVSAERLPELDADFVFATWRGDTGGKPQDELATe 
         :                                                                                                                          
 3be5(D) : GGAPEIYRKLAELTGTQSQLAILERRYQAQINALKATLDSQKITVSVIQANQGKINVhSYHSLGRVLRDAGFRFPPLIESIPEGGRdVSAERLPELDADFVFATWRGDTGGKPQDELATe 
           ___________________________168__________________________________________________________________________________________ 

           _________________________________________________                                                                        
 3be5(A) : KVpGWCQFLTACRSGRYVLISREEAISNSFASLGLaAQIQSQIAGRPLP                                                                        
         :                                                                                                                          
 3be5(D) : KVpGWCQFLTACRSGRYVLISREEAISNSFASLGLaAQIQSQIAGRPLP                                                                        
           _________________________________________________                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.4
Translation
(A) 		0.1
Closure
(%) 		88.3
Bending Residues
( green ) 		  168 - 175
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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