PvuII Restriction Endonuclease (E.C.3.1.21.4)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name PvuII Restriction Endonuclease (E.C.3.1.21.4)
  Conformer 1
(PDB) 		1pvu (A)
  Conformer 2
(PDB) 		1pvi (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 113 1.25   41 - 155
2 37 0.69   4 - 40

Sequence


           _____________________________________40_________________________________________________________________________________ 
 1pvu(A) : SHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPG--gNDAVDNAGQEYELKSINIDLTKGFSTHHHMNPVIIAKYRQVPWIFAIYRGIAIEAIYRLEPKDLE 
         :                                                                                                                          
 1pvi(A) : SHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPGREGNDAVDNAGQEYELKSINIDLTKGFSTHHHMNPVIIAKYRQVPWIFAIYRGIAIEAIYRLEPKDLE 
           _____________________________________40_________________________________________________________________________________ 

           ____________________________________                                                                                     
 1pvu(A) : FYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY                                                                                     
         :                                                                                                                          
 1pvi(A) : FYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY                                                                                     
           ____________________________________                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.4
Translation
(A) 		-0.4
Closure
(%) 		98.4
Bending Residues
( green ) 		  40 - 41
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download