Smad 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Smad 3
  Conformer 1
(PDB) 		1mjs (A)
  Conformer 2
(PDB) 		1u7f (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 131 0.69   231 - 342   370 - 400
2 40 0.8   343 - 369   401 - 413

Sequence


           _______________________________________________________________________________________________________________341______ 
 1mjs(A) : PAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQR-----aTVCKIPPGCNLKIFNNQEF 
         :                                                                                                                          
 1u7f(C) : *AFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEF 
           _______________________________________________________________________________________________________________342______ 

           ___________________369____________________________400______________________                                              
 1mjs(A) : AALLAQSVNQGFEAVYQLTRMCTIRMSFVKGW-------tVTSTPCWIELHLNGPLQWLDKVLTQMGSPS*****                                              
         :                                                                                                                          
 1u7f(C) : AALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSIRCSv                                              
           ___________________370____________________________401______________________                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.8
Translation
(A) 		1.0
Closure
(%) 		83.9
Bending Residues
( green ) 		  341 - 343
  369 - 370
  400 - 401
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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