Sn-Glycerol-3-Phosphate Abc Transporter Substrate-Binding Protein Uspb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sn-Glycerol-3-Phosphate Abc Transporter Substrate-Binding Protein Uspb
  Conformer 1
(PDB) 		4mfi (A)
  Conformer 2
(PDB) 		6r1b (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 213 0.54   153 - 305   366 - 426
2 175 0.47   38 - 152   306 - 365

Sequence


           _______________________________________________________________________________________________________________________1 
 4mfi(A) : SVKSGSGPIDFWSSHPGQSSAAERELIGRFQDRFPTLSVKLIDAGKDYDEVAQKFNAALIGTDVPDVVLLDDRWWFHFALSGVLTALDDLFGQVGVDTTDYVDSLLADYEFNGRHYAVPY 
         :                                                                                                                          
 6r1b(A) : *****SGPIDFWSSHPGQSSAAERELIGRFQDRFPTLSVKLIDAGKDYDEVAQKFNAALIGTDVPDVVLLDDRWWFHFALSGVLTALDDLFGQVGVDTTDYVDSLLADYEFNGRHYAVPY 
           _______________________________________________________________________________________________________________________1 

           52______________________________________________________________________________________________________________________ 
 4mfi(A) : ARSTPLFYYNKAAWQQAGLPDRGPQSWSEFDEWGPELQRVVGAGRSAHGWANADLISWTFQGPNWAFGGAYSDKWTLTLTEPATIAAGNFYRNSIHGKGYAAVANDIANEFATGILASAV 
         :                                                                                                                          
 6r1b(A) : ARSTPLFYYN-aAWQQAGLPDRGPQSWSEFDEWGPELQRVVGAGRSAHGWANADLISWTFQGPNWAFGGAYSDKWTLTLTEPATIAAGNFYRNSIHGKGYAAVANDIANEFATGILASAV 
           52______________________________________________________________________________________________________________________ 

           _______________________________304_______________________________________________________362____________________________ 
 4mfi(A) : ASTGSLAGITASARFDFGAAPLPTGPDAAPACPTGGAGLAIPAKLSEERKVNALKFIAFVTNPTNTAYFSQQTGYLPVRKSAVDDASERHYLADNPRARVALDQLPHTRTQDYARVFLPG 
         :                                                                                                                          
 6r1b(A) : ASTGSLAGITASARFDFGAAPLPTGPDAAPACPTGGAGLAIPAKLSEERKVNALKFIAFVTNPTNTAYFSQQTGYLPVRKSAVDDASERHYLADNPRARVALDQLPHTRTQDYARVFLPG 
           _______________________________304_______________________________________________________362____________________________ 

           ___________________________________________                                                                              
 4mfi(A) : GDRIISAGLESIGLRGADVTKTFTNIQKRLQVILDRQIMRKLA                                                                              
         :                                                                                                                          
 6r1b(A) : GDRIISAGLESIGLRGADVTKTFTNIQKRLQVILDRQIM****                                                                              
           ___________________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		21.8
Translation
(A) 		0.8
Closure
(%) 		98.6
Bending Residues
( green ) 		  152 - 153
  304 - 306
  362 - 372
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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