Structural Polyprotein (P130)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Structural Polyprotein (P130)
  Conformer 1
(PDB) 		2ala (A)
  Conformer 2
(PDB) 		3n41 (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 239 1.41   3 - 45   47 - 47   119 - 189   256 - 379
2 138 2.39   46 - 46   48 - 118   190 - 255

Sequence


           ____________________________________________45______________________________________________________________________118_ 
 2ala(A) : *YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKVYTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHA 
         :                                                                                                                          
 3n41(F) : GYEHVTVIPNTVGVPYKTLVNRPGYSPMVLEMELLSVTLEPTLSLDYITCEYKTVIPSPYVKCCGTAECKDKNLPDYSCKVFTGVYPFMWGGAYCFCDAENTQLSEAHVEKSESCKTEFA 
           ____________________________________________45______________________________________________________________________118_ 

           ___________________________________________________________________189__________________________________________________ 
 2ala(A) : SAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSG 
         :                                                                                                                          
 3n41(F) : SAYRAHTASASAKLRVLYQGNNITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFGDIQSRTPESKDVYANTQLVLQRPAAGTVHVPYSQAPSG 
           ___________________________________________________________________189__________________________________________________ 

           _____________255________________________________________________________________________________________________________ 
 2ala(A) : FKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTA 
         :                                                                                                                          
 3n41(F) : FKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDIPEAAFTRVVDAPSLTDMSCEVPACTHSSDFGGVAIIKYAASKKGKCAVHSMTNAVTIREAEIEVEGNSQLQISFSTA 
           _____________255________________________________________________________________________________________________________ 

           _________________________                                                                                                
 2ala(A) : SASPSFVVSLCSARATCSASCEPPK                                                                                                
         :                                                                                                                          
 3n41(F) : LASAEFRVQVCSTQVHCAAECH***                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.5
Translation
(A) 		-0.8
Closure
(%) 		62.1
Bending Residues
( green ) 		  45 - 48
  118 - 119
  189 - 190
  255 - 256
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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