Tt1252 Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tt1252 Protein
  Conformer 1
(PDB) 		1uf9 (A)
  Conformer 2
(PDB) 		1uf9 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 107 0.37   8 - 14   17 - 44   97 - 132   157 - 194
2 25 0.68   15 - 16   133 - 156
3 37 0.5   53 - 89

Sequence


           _______14____________________________44___________________________________________89____________________________________ 
 1uf9(A) : KHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLeELSRLEAPLVFLEIPLLFEKGWEGRLH 
         :                                                                                                                          
 1uf9(B) : KHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLeELSRLEAPLVFLEIPLLFEKGWEGRLH 
           _______14____________________________44___________________________________________89____________________________________ 

           ___132____________________156_______________________________________                                                     
 1uf9(A) : GTLLVAAPLEERVRRVaRSGLSREEVLARERAQpEEEKRKRATWVLENTGSLEDLERALKAVLAELTG                                                     
         :                                                                                                                          
 1uf9(B) : GTLLVAAPLEERVRRVaRSGLSREEVLARERAQpEEEKRKRATWVLENTGSLEDLERALKAVLAELTG                                                     
           ___132____________________156_______________________________________                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.0
Translation
(A) 		0.1
Closure
(%) 		17.7
Bending Residues
( green ) 		  14 - 17
  132 - 133
  156 - 157
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		4.5
Translation
(A) 		-0.3
Closure
(%) 		88.3
Bending Residues
( green ) 		  44 - 53
  89 - 97
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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