Udp-Glucose 6-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Glucose 6-Dehydrogenase
  Conformer 1
(PDB) 		2q3e (A)
  Conformer 2
(PDB) 		3itk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 181 0.45   3 - 91   107 - 108   120 - 126   131 - 147   150 - 158   160 - 160   165 - 220
2 34 0.63   92 - 106   109 - 119   127 - 130   148 - 149   159 - 159   161 - 161
3 238 0.41   221 - 464

Sequence


           ________________________________________________________________________________________89______________106__________119 
 2q3e(A) : *MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQN 
         :                                                                                                                          
 3itk(A) : SMFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQN 
           ________________________________________________________________________________________89______________106__________119 

           ____126_130______________147________158__________________________________________________________219____________________ 
 2q3e(A) : SNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISA 
         :                                                                                                                          
 3itk(A) : SNGYKIVTEKSAVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISA 
           ____126_130______________147________158__________________________________________________________219____________________ 

           ________________________________________________________________________________________________________________________ 
 2q3e(A) : LCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMD 
         :                                                                                                                          
 3itk(A) : LCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________                 
 2q3e(A) : EGAHLHIYDPKVPREQIVVDLSH---dQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKV                 
         :                                                                                                                          
 3itk(A) : EGAHLHIYDPKVPREQIVVDLSHPeDDQVSRLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKV                 
           ________________________________________________________________________________________________________                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.2
Translation
(A) 		-0.1
Closure
(%) 		99.9
Bending Residues
( green ) 		  89 - 92
  106 - 109
  119 - 120
  126 - 127
  130 - 131
  147 - 152
  158 - 167
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		13.3
Translation
(A) 		0.2
Closure
(%) 		89.6
Bending Residues
( green ) 		  219 - 225
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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