Glutamine Abc Transporter Permease And Substrate Binding Protein Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamine Abc Transporter Permease And Substrate Binding Protein Protein
  Conformer 1
(PDB) 		4la9 (A)
  Conformer 2
(PDB) 		6fxg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 124 0.35   29 - 112   210 - 249
2 97 0.6   113 - 209

Sequence


           ____________________________________________________________________________________112_________________________________ 
 4la9(A) : AETTVKIASDSSYAPFEFQNGQKKWVGIDVDIMQEVAKINDWKLEMSYPGFDAALQNLKAGQVDGIIAGMTITDERKETFDFSNPYYTSALTIATTKDSKLSDYSDLKGKAVGAKNGTAA 
         :                                                                                                                          
 6fxg(A) : *ETTVKIASDSSYAPFEFQNGQKKWVGIDVDIMQEVAKINDWKLEMSYPGFDAALQNLKAGQVDGIIAGMTITDERKETFDFSNPYYTSALTIATTKDSKLSDYSDLKGKAVGAKNGTAA 
           ____________________________________________________________________________________112_________________________________ 

           __________________________________________________________206_____________________________________________               
 4la9(A) : QTWLQENQKKYGYTIKTYSDGVHMFAALSSGNIAGAMDEVPVISYAMKQGQDLAMNFPSISLPGGYGFAVMKGKNSTLVDGFNKALAEMKSNGDYDKILKKYGITA               
         :                                                                                                                          
 6fxg(A) : QTWLQENQKKYGYTIKTYSDGVHMFAALSSGNIAGAMDEVPVISYAMKQGQDLAMNFPSISLPGGYGFAVMKGKNSTLVDGFNKALAEMKSNGDYDKILKKYGITA               
           __________________________________________________________206_____________________________________________               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		39.7
Translation
(A) 		1.0
Closure
(%) 		99.1
Bending Residues
( green ) 		  112 - 116
  206 - 210
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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