Glutamate Receptor Ionotropic, Delta-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Delta-1
  Conformer 1
(PDB) 		7z2r (A)
  Conformer 2
(PDB) 		2v3u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 143 1.43   3 - 106   218 - 256
2 103 1.7   107 - 214

Sequence


           ______________________________________________________________________________________________________105_______________ 
 7z2r(A) : GGLTLKVVTVLEEPFVMVAENILGQPKRYKGFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHNTSWNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYSVGILIKKGTPVRTF 
         :                                                                                                                          
 2v3u(A) : GGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSL 
           ______________________________________________________________________________________________________105_______________ 

           __________________________________________________________________________________________213___________________________ 
 7z2r(A) : QDLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGADNCVSNPSEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDLFSQRI 
         :                                                                                                                          
 2v3u(A) : QDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRnN-----VLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVG---aDRGYGIALQHGSPYRDVFSQRI 
           __________________________________________________________________________________________213___________________________ 

           _____________________                                                                                                    
 7z2r(A) : LELQDTGDLDVLKQKWWP***                                                                                                    
         :                                                                                                                          
 2v3u(A) : LELQQSGDMDILKHKWWPKNG                                                                                                    
           _____________________                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		31.4
Translation
(A) 		-0.7
Closure
(%) 		99.8
Bending Residues
( green ) 		  105 - 107
  213 - 220
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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