Glycine Receptor Subunit Alphaz1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycine Receptor Subunit Alphaz1
  Conformer 1
(PDB) 		3jae (A)
  Conformer 2
(PDB) 		3jaf (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 235 0.36   38 - 239   286 - 318
2 39 0.62   240 - 250   258 - 285
3 48 0.49   251 - 257   319 - 361

Sequence


           ________________________________________________________________________________________________________________________ 
 3jae(A) : APSEFLDKLMGKVSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLY 
         :                                                                                                                          
 3jaf(A) : APSEFLDKLMGKVSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLY 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________239______248________________ 
 3jae(A) : SIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDA 
         :                                                                                                                          
 3jaf(A) : SIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDA 
           ____________________________________________________________________________________________239______248________________ 

           __________________285______________________________318________________________________________________                   
 3jae(A) : APARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIARA--kLFISRAKRIDTVSRVAFPLVFLIFNIFYWITYKLV**                   
         :                                                                                                                          
 3jaf(A) : APARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIARAGTKLFISRAKRIDTVSRVAFPLVFLIFNIFYWITYKLVPR                   
           __________________285______________________________318________________________________________________                   

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 6.4 -0.1 71.5   239 - 240   285 - 286 Bending Region Analysis
1 3 7.8 0.3 28.3   318 - 319 Bending Region Analysis
2 3 6.4 -0.2 72.7   248 - 258 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification: Hinge

PyMOL Script

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