Hla Class I Histocompatibility Antigen, A-3 Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hla Class I Histocompatibility Antigen, A-3 Alpha Chain
  Conformer 1
(PDB) 		3rl1 (A)
  Conformer 2
(PDB) 		3rl2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 180 0.76   3 - 182
2 90 1.19   183 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 3rl1(A) : GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDG 
         :                                                                                                                          
 3rl2(A) : GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________176________________________________________________________________ 
 3rl1(A) : KDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
         :                                                                                                                          
 3rl2(A) : KDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
           _____________________________________________________176________________________________________________________________ 

           __________________________________                                                                                       
 3rl1(A) : FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW                                                                                       
         :                                                                                                                          
 3rl2(A) : FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW                                                                                       
           __________________________________                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.6
Translation
(A) 		0.2
Closure
(%) 		98.7
Bending Residues
( green ) 		  176 - 183
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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