Hth-Type Transcriptional Regulator Mqsa (Ygit/b3021)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hth-Type Transcriptional Regulator Mqsa (Ygit/b3021)
  Conformer 1
(PDB) 		3gn5 (A)
  Conformer 2
(PDB) 		3o9x (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 67 0.78   2 - 68
2 61 0.79   69 - 129

Sequence


           __________________________________________________________________67____________________________________________________ 
 3gn5(A) : HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRV 
         :                                                                                                                          
 3o9x(A) : HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRV 
           __________________________________________________________________67____________________________________________________ 

           ____________                                                                                                             
 3gn5(A) : LDKHPELLNEIR                                                                                                             
         :                                                                                                                          
 3o9x(A) : LDKHPELLNEIR                                                                                                             
           ____________                                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		121.1
Translation
(A) 		3.5
Closure
(%) 		48.5
Bending Residues
( green ) 		  67 - 71
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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