Hydrogen Peroxide-Inducible Genes Activator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hydrogen Peroxide-Inducible Genes Activator
  Conformer 1
(PDB) 		6g1d (A)
  Conformer 2
(PDB) 		6g1d (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 223 1.45   90 - 90   92 - 320
2 83 0.75   6 - 89   91 - 91

Sequence


           _____________________________________________________________________________________89_________________________________ 
 6g1d(A) : NKEYRPTLAQLRTFVTIAECKHFGTAATKLSISQPSLSQALVALETGLGVQLIERSTRKVIVTPAGEKLLPFAKSTLDAAESFLSHAKGANGSLTGPLTVGIIPTAAPYILPSMLSIVDE 
         :                                                                                                                          
 6g1d(B) : *KEYRPTLAQLRTFVTIAECKHFGTAATKLSISQPSLSQALVALETGLGVQLIER--rKVIVTPAGEKLLPFAKSTLDAAESFLSHAKGANGSLTGPLTVGIIPTAAPYILPSMLSIVDE 
           _____________________________________________________________________________________89_________________________________ 

           ________________________________________________________________________________________________________________________ 
 6g1d(A) : EYPDLEPHIVEDQTKHLLALLRDGAIDVAMMALPSEAPGMKEIPLYDEDFIVVTASDHPFAGRQDLELSALEDLDLLLLDDGHSLHDQIVDLCRRGDINPaVTRASSLTTVMQLVVAGLG 
         :                                                                                                                          
 6g1d(B) : EYPDLEPHIVEDQTKHLLALLRDGAIDVAMMALPSEAPGMKEIPLYDEDFIVVTASDHPFAGRQDLELSALEDLDLLLLDDGHSLHDQIVDLCRRGDI--aVTRASSLTTVMQLVVAGLG 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________                                           
 6g1d(A) : STLVPISAIPWECTRPGLATANFNSDVTANRRIGLVYRSSSSRAEEFEQFALILQRAFQEAVALAASTGITLKQN***                                           
         :                                                                                                                          
 6g1d(B) : STLVPISAIPWECTRPGLATANFNSDVTANRRIGLVYRSSSSRAEEFEQFALILQRAFQEAVALAASTGITLKQNVAV                                           
           ______________________________________________________________________________                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		55.1
Translation
(A) 		9.6
Closure
(%) 		56.4
Bending Residues
( green ) 		  89 - 96
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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