Intermedilysin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Intermedilysin
  Conformer 1
(PDB) 		1s3r (A)
  Conformer 2
(PDB) 		4bik (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 331 1.19   58 - 93   103 - 414
2 121 1.17   94 - 102   415 - 526

Sequence


           ____________________________________93______102_________________________________________________________________________ 
 1s3r(A) : NSEAAKKALNDYIWGLQYDKLNILTHQGEKLKNHSSREAFHRPGEYVVIEKKKQSISNATSKLSVSSANDDRIFPGALLKADQSLLENLPTLIPVNRGKTTISVNLPGLKNGESNLTVEN 
         :                                                                                                                          
 4bik(A) : NSEAAKKALNDYIWGLQYDKLNILTHQGEKLKNHSSREAFHRPGEYVVIEKKKQSISNATSKLSVSSANDDRIFPGALLKADQSLLENLPTLIPVNRGKTTISVNLPGLKNGESNLTVEN 
           ____________________________________93______102_________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1s3r(A) : PSNSTVRTAVNNLVEKWIQNYSKTHAVPARMQYESISAQSMSQLQAKFGADFSKVGAPLNVDFSSVHKGEKQVFIANFRQVYYTASVDSPNSPSALFGSGITPTDLINRGVNSKTPPVYV 
         :                                                                                                                          
 4bik(A) : PSNSTVRTAVNNLVEKWIQNYSKTHAVPARMQYESISAQSMSQLQAKFGADFSKVGAPLNVDFSSVHKGEKQVFIANFRQVYYTASVDSPNSPSALFGSGITPTDLINRGVNSKTPPVYV 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________________413__ 
 1s3r(A) : SNVSYGRAMYVKFETTSKSTKVQAAIDAVVKGAKLKAGTEYENILKNTKITAVVLGGNPGEASKVITGNIDTLKDLIQKGSNFSAQSPAVPISYTTSFVKDNSIATIQNNTDYIETKVTS 
         :                                                                                                                          
 4bik(A) : SNVSYGRAMYVKFETTSKSTKVQAAIDAVVK--------eYENILKNTKICAVVL---------vCTGNIDTLKDLIQKGSNFSAQSPAVPISYTTSFVKDNSIATIQNNTDYIETKVTS 
           ___________________________________________________________________________________________________________________413__ 

           _________________________________________________________________________________________________________________        
 1s3r(A) : YKDGALTLNHDGAFVARFYVYWEELGHDADGYETIRSRSWSGNGYNRGAHYSTTLRFKGNVRNIRVKVLGATGLAWEPWRLIYSKNDLPLVPQRNISTWGTTLHPQFEDKVVK        
         :                                                                                                                          
 4bik(A) : YKDGALTLNHDGAFVARFYVYWEELGHDADGYETIRSRSWSGNGYNRGAHYSTTLRFKGNVRNIRVKVLGATGLAWEPWRLIYSKNDLPLVPQRNISTWGTTLHPQFEDKVVK        
           _________________________________________________________________________________________________________________        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		36.9
Translation
(A) 		1.4
Closure
(%) 		46.5
Bending Residues
( green ) 		  93 - 95
  102 - 103
  413 - 416
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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