Neural Cell Adhesion Molecule 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Neural Cell Adhesion Molecule 2
  Conformer 1
(PDB) 		2wim (A)
  Conformer 2
(PDB) 		2wim (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 184 0.6   24 - 207   285 - 288
2 70 0.8   208 - 284   289 - 290

Sequence


           ________________________________________________________________________________________________________________________ 
 2wim(A) : ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 
         :                                                                                                                          
 2wim(B) : ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________207_______________________________________________________ 
 2wim(A) : SSSPAPAVSWLYHtTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS 
         :                                                                                                                          
 2wim(B) : SSSPAPAVSWLYHtTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFN-----gEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS 
           ______________________________________________________________207_______________________________________________________ 

           ___________________284______________                                                                                     
 2wim(A) : NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV                                                                                     
         :                                                                                                                          
 2wim(B) : NTELTV----nSDGGPYVCRATNKAGEDEKQA****                                                                                     
           ___________________284______________                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.8
Translation
(A) 		0.4
Closure
(%) 		67.7
Bending Residues
( green ) 		  207 - 208
  284 - 289
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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