DynDom - Protein Domain Motions

Of Elongation Factor Tu (Ef-Tu)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Of Elongation Factor Tu (Ef-Tu)
Conformer 1 (PDB)	1ttt (A)
Conformer 2 (PDB)	1ob5 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	218	1.25	8 - 215 222 - 222 236 - 242 292 - 293
2	178	1.29	216 - 221 223 - 235 243 - 291 294 - 403

Sequence

`________________________________________________________________________________________________________________________` `1ttt(A) : AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI` `:` `1ob5(A) : *****IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________211_______221___________235____2` `1ttt(A) : LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG` `:` `1ob5(A) : LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG` `________________________________________________________________________________________211_______221___________235____2` `42______________________________________________291_____________________________________________________________________` `1ttt(A) : RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVE` `:` `1ob5(A) : RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVE` `42______________________________________________291_____________________________________________________________________` `_____________________________________________` `1ttt(A) : MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE` `:` `1ob5(A) : MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE` `_____________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	15.8
Translation (A)	0.8
Closure (%)	64.3
Bending Residues ( green )	211 - 216 221 - 224 235 - 236 242 - 243 291 - 297
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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