Plasmepsin 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Plasmepsin 2
  Conformer 1
(PDB) 		1lf4 (A)
  Conformer 2
(PDB) 		1xdh (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 194 0.7   7 - 155   159 - 186   268 - 268   272 - 284   320 - 321   323 - 323
2 117 0.54   156 - 158   187 - 267   269 - 271   285 - 319   322 - 322

Sequence


           ________________________________________________________________________________________________________________________ 
 1lf4(A) : LGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTAS 
         :                                                                                                                          
 1xdh(A) : **SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTAS 
           ________________________________________________________________________________________________________________________ 

           __________________________________155____________________________186____________________________________________________ 
 1lf4(A) : TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVI- 
         :                                                                                                                          
 1xdh(A) : TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIK 
           __________________________________155____________________________186____________________________________________________ 

           __________________________267_271__________284________________________________319__________                              
 1lf4(A) : -----fYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAKKNL                              
         :                                                                                                                          
 1xdh(A) : VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAKKNL                              
           __________________________267_271__________284________________________________319__________                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.9
Translation
(A) 		-0.2
Closure
(%) 		99.9
Bending Residues
( green ) 		  155 - 164
  186 - 187
  267 - 269
  271 - 272
  284 - 285
  319 - 323
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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