Protein (Surface Antigen Psaa)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Surface Antigen Psaa)
  Conformer 1
(PDB) 		1psz (A)
  Conformer 2
(PDB) 		3zka (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 186 1.15   34 - 186   208 - 210   220 - 221   223 - 229   232 - 232   279 - 298
2 88 0.67   187 - 207   211 - 219   222 - 222   230 - 231   233 - 278   299 - 307

Sequence


           ________________________________________________________________________________________________________________________ 
 1psz(A) : KKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLN 
         :                                                                                                                          
 3zka(A) : ********KLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________186__________________207_________219____________________________________________ 
 1psz(A) : LENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMK 
         :                                                                                                                          
 3zka(A) : LENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMK 
           ________________________________________186__________________207_________219____________________________________________ 

           ____________278_________________298___________                                                                           
 1psz(A) : TVSQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                           
         :                                                                                                                          
 3zka(A) : TVSQDTNIPIYAQIFTNSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                           
           ____________278_________________298___________                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.6
Translation
(A) 		-0.2
Closure
(%) 		99.6
Bending Residues
( green ) 		  186 - 187
  207 - 208
  210 - 211
  219 - 233
  278 - 279
  298 - 299
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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