Proton-Gated Ion Channel

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Proton-Gated Ion Channel
  Conformer 1
(PDB) 		4hfi (A)
  Conformer 2
(PDB) 		4hfi (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 261 0.18   9 - 43   76 - 91   104 - 313
2 46 0.42   7 - 8   44 - 75   92 - 103

Sequence


           ___8_________________________________43______________________________75___________88____________103_____________________ 
 4hfi(A) : VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 
         :                                                                                                                          
 4hfi(B) : VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 
           ___8_________________________________43______________________________75___________88____________103_____________________ 

           ________________________________________________________________________________________________________________________ 
 4hfi(A) : TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVET 
         :                                                                                                                          
 4hfi(B) : TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVET 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________                                                  
 4hfi(A) : NLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF                                                  
         :                                                                                                                          
 4hfi(B) : NLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF                                                  
           _______________________________________________________________________                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.2
Translation
(A) 		0.0
Closure
(%) 		88.3
Bending Residues
( green ) 		  8 - 15
  43 - 44
  75 - 76
  88 - 92
  103 - 104
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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