Rad50 Abc-Atpase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Rad50 Abc-Atpase
  Conformer 1
(PDB) 		1ii8 (A)
  Conformer 2
(PDB) 		3qku (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 160 3.39   3 - 162
2 31 4.53   163 - 193

Sequence


           ________________________________________________________________________________________________________________________ 
 1ii8(A) : MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAIS 
         :                                                                                                                          
 3qku(A) : MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAIS 
           ________________________________________________________________________________________________________________________ 

           _______________________________________162______________________________________________________________________________ 
 1ii8(A) : AFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILARTE********************************************* 
         :                                                                                                                          
 3qku(A) : AFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYGGSGGIKDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGK 
           _______________________________________162______________________________________________________________________________ 

           _______________________________________________________________________________________________________________________  
 1ii8(A) : ***********************************************************************************************************************  
         :                                                                                                                          
 3qku(A) : YSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS  
           _______________________________________________________________________________________________________________________  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		82.7
Translation
(A) 		0.0
Closure
(%) 		83.8
Bending Residues
( green ) 		  162 - 163
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download