Siderophore Periplasmic Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Siderophore Periplasmic Binding Protein
  Conformer 1
(PDB) 		5dh0 (B)
  Conformer 2
(PDB) 		5dh1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 137 0.32   191 - 197   221 - 221   224 - 226   228 - 228   231 - 342   345 - 346   349 - 359
2 131 0.48   92 - 190   198 - 220   222 - 223   227 - 227   229 - 230   343 - 344   347 - 348

Sequence


           _________________________________________________________________________________________________________190____197_____ 
 5dh0(B) : HHHHHSeIPADPQRIVALEFGTEVVLEAGIEPVGVIEPVATLYTAEEFEQLSTYPVVQSASLEINMEAIAEAQPDLIIGGVRVESHDEYVGIREDLEKIAPTVFFDFDGAGSGLRNMTLE 
         :                                                                                                                          
 5dh1(A) : *HHHHS-iPADPQRIVALEFGTEVVLEAGIEPVGVIEPVATLYTAEEFEQLSTYPVVQSASLEINMEAIAEAQPDLIIGGVRVESHDEYVGIREDLEKIAPTVFFDFDGAGSGLRNMTLE 
           _________________________________________________________________________________________________________190____197_____ 

           _______________220___226________________________________________________________________________________________________ 
 5dh0(B) : LSRVVGDGERAEAEQQRFEERVEEISTAYADQLADTTFALVFGVDGEFAVVNTNAWGGEILHTLGAKQSKAQQPAGENFAAFYSYEEIDELSDADVIFYETDAQENPDPFTEALLEQKLW 
         :                                                                                                                          
 5dh1(A) : LSRVVGDGERAEAEQQRFEERVEEISTAYADQLADTTFALVFGVDGEFAVVNTNAWGGEILHTLGAKQSKAQQPAGENFAAFYSYEEIDELSDADVIFYETDAQENPDPFTEALLEQKLW 
           _______________220___226________________________________________________________________________________________________ 

           _________________342___________________                                                                                  
 5dh0(B) : QSLPAVEAGQVHPLRYSAARTYAQANIVLDQIEEVLKGL                                                                                  
         :                                                                                                                          
 5dh1(A) : QSLPAVEAGQVHPLRYSAARTYAQANIVLDQIEEVLKGL                                                                                  
           _________________342___________________                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.1
Translation
(A) 		-0.2
Closure
(%) 		60.1
Bending Residues
( green ) 		  190 - 193
  197 - 198
  220 - 224
  226 - 231
  342 - 349
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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