Signal Recognition Particle Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Signal Recognition Particle Protein
  Conformer 1
(PDB) 		2cnw (A)
  Conformer 2
(PDB) 		2ffh (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 191 2.22   44 - 53   88 - 258   269 - 278
2 87 1.8   10 - 43   54 - 87   259 - 268   279 - 287

Sequence


           _____________________________________39______________________________________________87_________________________________ 
 2cnw(A) : ***QLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 
         :                                                                                                                          
 2ffh(A) : MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 
           _____________________________________39______________________________________________87_________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cnw(A) : YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVT 
         :                                                                                                                          
 2ffh(A) : YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVT 
           ________________________________________________________________________________________________________________________ 

           _______________258_______268__273_______________________________________________________________________________________ 
 2cnw(A) : GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG******************************************************************* 
         :                                                                                                                          
 2ffh(A) : GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAeLSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGLKVDEKAIKRLEAIVLSMTP 
           _______________258_______268__273_______________________________________________________________________________________ 

           _______________________________________________                                                                          
 2cnw(A) : ***********************************************                                                                          
         :                                                                                                                          
 2ffh(A) : EERKDPRILNGSRRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLEK                                                                          
           _______________________________________________                                                                          

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.6
Translation
(A) 		-0.1
Closure
(%) 		94.3
Bending Residues
( green ) 		  39 - 55
  87 - 89
  258 - 259
  268 - 269
  273 - 279
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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