Ubiquinol Cytochrome C Oxidoreductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ubiquinol Cytochrome C Oxidoreductase
  Conformer 1
(PDB) 		1bcc (E)
  Conformer 2
(PDB) 		3bcc (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 123 0.92   72 - 194
2 69 1.5   3 - 71

Sequence


           ______________________________________________________________64________________________________________________________ 
 1bcc(E) : SHTDIKVPNFSDYRRPPDDYSTKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDP 
         :                                                                                                                          
 3bcc(E) : SHTDIKVPNFSDYRRPPDDYSTKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDP 
           ______________________________________________________________64________________________________________________________ 

           ____________________________________________________________________________                                             
 1bcc(E) : QHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG                                             
         :                                                                                                                          
 3bcc(E) : QHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG                                             
           ____________________________________________________________________________                                             

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		56.2
Translation
(A) 		0.1
Closure
(%) 		85.9
Bending Residues
( green ) 		  64 - 74
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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