D(2) Dopamine Receptor, Endolysin Chimera

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D(2) Dopamine Receptor, Endolysin Chimera
  Conformer 1
(PDB) 		6cm4 (A)
  Conformer 2
(PDB) 		6vms (R)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 230 2.75   42 - 220   382 - 425   430 - 440
2 22 2.28   364 - 381   426 - 429

Sequence


           ________________________________________________________________________________________________________________________ 
 6cm4(A) : ***NYYATLLTLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASALNLCAISIDRYTAVAMP----tRYSSKRR 
         :                                                                                                                          
 6vms(R) : PHYNYYATLLTLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRR 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________220___________________________________________________ 
 6cm4(A) : VTVMISIVWVLSFTISCPLLFGLNNADQNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAI 
         :                                                                                                                          
 6vms(R) : VTVMISIVWVLSFTISCPLLFGLNNADQNECIIANPAFVVYSSIVSFYVPFIVILLVYIKIYIVLRRRRK-------------------------------------------------- 
           __________________________________________________________________220___________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6cm4(A) : GRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYsQQKEKKAT 
         :                                                                                                                          
 6vms(R) : ------------------------------------------------LVN-------------TN--RKL----------------------------------------SQQKEKKAT 
           ________________________________________________________________________________________________________________________ 

           ______381________________________________________424__429______________                                                  
 6cm4(A) : QMAAIVAGVFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKILH*                                                  
         :                                                                                                                          
 6vms(R) : QLLAIYLGLFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAINPIIYTTFNIEFRKAFLKILHC                                                  
           ______381________________________________________424__429______________                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		50.2
Translation
(A) 		1.6
Closure
(%) 		36.7
Bending Residues
( green ) 		  220 - 365
  381 - 382
  424 - 426
  429 - 430
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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