Polymerase (Dna Directed) Kappa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Polymerase (Dna Directed) Kappa
  Conformer 1
(PDB) 		2oh2 (A)
  Conformer 2
(PDB) 		6cst (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 342 0.77   44 - 109   183 - 515
2 82 0.63   35 - 43   110 - 182

Sequence


           _______________________40__________________________________________________________________109__________________________ 
 2oh2(A) : *****************KEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM 
         :                                                                                                                          
 6cst(A) : LLRMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM 
           _______________________40__________________________________________________________________109__________________________ 

           ____________________________________________182_________________________________________________________________________ 
 2oh2(A) : LSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKnSVVFGTSAQEVVKEIRFRIEQKTTLTASAG 
         :                                                                                                                          
 6cst(A) : LSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKnSVVFGTSAQEVVKEIRFRIEQKTTLTASAG 
           ____________________________________________182_________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2oh2(A) : IAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQY 
         :                                                                                                                          
 6cst(A) : IAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQY 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________                                   
 2oh2(A) : SLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFP*                                   
         :                                                                                                                          
 6cst(A) : SLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPN                                   
           ______________________________________________________________________________________                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.3
Translation
(A) 		-0.8
Closure
(%) 		84.9
Bending Residues
( green ) 		  40 - 44
  109 - 110
  182 - 183
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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