Polymerase (Dna Directed) Kappa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Polymerase (Dna Directed) Kappa
  Conformer 1
(PDB) 		2oh2 (A)
  Conformer 2
(PDB) 		4u6p (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 354 0.93   41 - 107   172 - 515
2 68 0.5   37 - 40   108 - 171

Sequence


           _____37___________________________________________________________________107___________________________________________ 
 2oh2(A) : **KEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 
         :                                                                                                                          
 4u6p(A) : LDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 
           _____37___________________________________________________________________107___________________________________________ 

           __________________171___________________________________________________________________________________________________ 
 2oh2(A) : AMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKnSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKN 
         :                                                                                                                          
 4u6p(A) : AMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKnSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKN 
           __________________171___________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2oh2(A) : KPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQ 
         :                                                                                                                          
 4u6p(A) : KPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQ 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________                                                  
 2oh2(A) : KERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFP*                                                  
         :                                                                                                                          
 4u6p(A) : KERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPN                                                  
           _______________________________________________________________________                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.7
Translation
(A) 		-0.4
Closure
(%) 		76.3
Bending Residues
( green ) 		  37 - 43
  107 - 108
  171 - 174
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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