Galactose/glucose-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Galactose/glucose-Binding Protein
  Conformer 1
(PDB) 		1gcg (A)
  Conformer 2
(PDB) 		3gbp (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 152 0.21   16 - 17   112 - 211   214 - 259   294 - 297
2 137 0.2   9 - 15   18 - 111   212 - 213   260 - 293

Sequence


           _____________15_____________________________________________________________________________________________111_________ 
 1gcg(A) : ADTRIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQG 
         :                                                                                                                          
 3gbp(A) : **TRIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQG 
           _____________15_____________________________________________________________________________________________111_________ 

           ________________________________________________________________________________________211_____________________________ 
 1gcg(A) : DLIAKHWQANQGWDLNKDGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
         :                                                                                                                          
 3gbp(A) : DLIAKHWQANQGWDLNKDGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
           ________________________________________________________________________________________211_____________________________ 

           ________________259_______________________________293________________                                                    
 1gcg(A) : ALALVKSGAMAGTVLNDANNQAKATFDLAKNLAEGKGAADGTSWKIENKIVRVPYVGVDKDNLSEFTQK                                                    
         :                                                                                                                          
 3gbp(A) : ALALVKSGAMAGTVLNDANNQAKATFDLAKNLAEGKGAADGTSWKIENKIVRVPYVGVDKDNLSEFT**                                                    
           ________________259_______________________________293________________                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		1.9
Translation
(A) 		0.2
Closure
(%) 		99.9
Bending Residues
( green ) 		  15 - 18
  111 - 112
  211 - 214
  259 - 260
  293 - 294
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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