Glutamate Receptor Ionotropic, Kainate 3,Glutamate Receptor Ionotropic, Kainate 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Kainate 3,Glutamate Receptor Ionotropic, Kainate 3
  Conformer 1
(PDB) 		5nf6 (A)
  Conformer 2
(PDB) 		4eow (H)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 43 13.44   10 - 52
2 20 5.9   77 - 96

Sequence


           ________________________________________________________________________________________________________________________ 
 5nf6(A) : ************************************************************************************NRSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCID 
         :                                                                                                                          
 4eow(H) : QVHLVQSGSELKKPGASVKVSCKASGYSFSRYGIKWVRQAPGQGLEWMGWINTRSGVPAYAQGFTGRFVFSLDTSVDTAFLEISSLKTEDTGIYYCATRPPRFYDKTEYWEDGFDVWGRG 
           ________________________________________________________________________________________________________________________ 

           ____________52__________________________________________________________________________________________________________ 
 5nf6(A) : LLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTPIDSADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMW 
         :                                                                                                                          
 4eow(H) : TLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK************ 
           ___________134__________________________________________________________________________________________________________ 

           __________________________________________________________________________________________________                       
 5nf6(A) : AFMSSKPSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWRGSGCP                       
         :                                                                                                                          
 4eow(H) : **************************************************************************************************                       
           __________________________________________________________________________________________________                       

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		174.5
Translation
(A) 		15.6
Closure
(%) 		26.5
Bending Residues
( green ) 		  52 - 77
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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