Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glyceraldehyde-3-Phosphate Dehydrogenase
  Conformer 1
(PDB) 		1dc5 (B)
  Conformer 2
(PDB) 		1gae (O)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 171 0.35   13 - 13   40 - 44   46 - 51   150 - 215   219 - 237   239 - 312
2 155 0.39   2 - 12   14 - 39   45 - 45   52 - 149   216 - 218   238 - 238   313 - 328

Sequence


           ___________12________________________39___44_____51_____________________________________________________________________ 
 1dc5(B) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
         :                                                                                                                          
 1gae(O) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
           ___________12________________________39___44_____51_____________________________________________________________________ 

           __________________________149________________________________________________________208__________________________237___ 
 1dc5(B) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
         :                                                                                                                          
 1gae(O) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
           __________________________149________________________________________________________208__________________________237___ 

           _____________________________________________________________________312__________________                               
 1dc5(B) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
         :                                                                                                                          
 1gae(O) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDTETGYSNKVLDLIAHISK                               
           _____________________________________________________________________312__________________                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.0
Translation
(A) 		0.0
Closure
(%) 		56.7
Bending Residues
( green ) 		  12 - 14
  39 - 40
  44 - 46
  51 - 52
  149 - 150
  208 - 220
  237 - 239
  312 - 313
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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