Hiv-1 Hxbc2 Gp120 Core

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hiv-1 Hxbc2 Gp120 Core
  Conformer 1
(PDB) 		3idx (G)
  Conformer 2
(PDB) 		3hi1 (G)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 255 4.25   92 - 112   212 - 490
2 26 6.44   113 - 211

Sequence


           ______________________107_____________________________________211_______________________________________________________ 
 3idx(G) : EVVLVNVTENFNWCKNDMVEQMHEDICSLWDQSLKPCVKLTPLCVGAGSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSSQLLLNGSLA 
         :                                                                                                                          
 3hi1(G) : *******TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLT-----GGS----VITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLA 
           ______________________107_____________________________________211_______________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3idx(G) : EEEVVIRSCNFTDNAKTIIVQLNTSVEINCTGAG----HCNIARAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHWFNCGGEFFYCNSTQLFNSTWFNSgSDTITLPCRIKQ 
         :                                                                                                                          
 3hi1(G) : EEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNrQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLF--TW---NDrNITLPCRIKQ 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________                                                   
 3idx(G) : IINMWCKVGKMMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIE                                                   
         :                                                                                                                          
 3hi1(G) : IINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE                                                   
           ______________________________________________________________________                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		153.8
Translation
(A) 		10.2
Closure
(%) 		9.2
Bending Residues
( green ) 		  107 - 113
  211 - 213
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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