Hiv-1 Protease (Bru Isolate)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hiv-1 Protease (Bru Isolate)
  Conformer 1
(PDB) 		1hhp  
  Conformer 2
(PDB) 		4hvp (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 61 0.7   3 - 32   35 - 40   60 - 73   85 - 97
2 32 0.84   33 - 34   41 - 59   74 - 84

Sequence


           ______________________________32______40_________________59___________72__________84_______________                      
 1hhp    : PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF                      
         :                                                                                                                          
 4hvp(A) : PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEI-gHKAIGTVLVGPTPVNIIGRNLLTQIG-tLNF                      
           ______________________________32______40_________________59___________72__________84_______________                      

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.9
Translation
(A) 		0.0
Closure
(%) 		72.8
Bending Residues
( green ) 		  32 - 36
  40 - 41
  59 - 60
  72 - 74
  84 - 85
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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