Mannose-1-Phosphate Guanylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mannose-1-Phosphate Guanylyltransferase
  Conformer 1
(PDB) 		2x65 (A)
  Conformer 2
(PDB) 		2x5s (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 300 0.54   3 - 139   150 - 167   187 - 331
2 29 1.14   140 - 149   168 - 186

Sequence


           ________________________________________________________________________________________________________________________ 
 2x65(A) : VMKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMKKNTAPACFIGTKLADDDEPVLVLPADHRIPDTKKFWK 
         :                                                                                                                          
 2x5s(A) : VMKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMKKNTAPACFIGTKLADDDEPVLVLPADHRIPDTKKFWK 
           ________________________________________________________________________________________________________________________ 

           ________________139_______149______________166_________________186______________________________________________________ 
 2x65(A) : TVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDY 
         :                                                                                                                          
 2x5s(A) : TVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDY 
           ________________139_______149______________166_________________186______________________________________________________ 

           ______________________________________________________________________________________________                           
 2x65(A) : AVMEKSKKVRVVKADFEWSDLGNWSSVREIEGYTEESDEVILVDSDRVFVKTHNKPIAVVGLSDVIVIDTPNGILICKEEYAQKVREVVKKLFR                           
         :                                                                                                                          
 2x5s(A) : AVMEKSKKVRVVKADFEWSDLGNWSSVREIEGYTEESDEVILVDSDRVFVKTHNKPIAVVGLSDVIVIDTPNGILICKEEYAQKVREVVKKLF*                           
           ______________________________________________________________________________________________                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.3
Translation
(A) 		0.2
Closure
(%) 		55.6
Bending Residues
( green ) 		  139 - 140
  149 - 155
  166 - 168
  186 - 189
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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