Mhc Class I H-2dd Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Class I H-2dd Heavy Chain
  Conformer 1
(PDB) 		1ddh (A)
  Conformer 2
(PDB) 		1vac (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 176 0.76   4 - 179
2 94 1.01   3 - 3   180 - 272

Sequence


           __3_____________________________________________________________________________________________________________________ 
 1ddh(A) : MSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRANGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 
         :                                                                                                                          
 1vac(A) : GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 
           __3_____________________________________________________________________________________________________________________ 

           _________________________________________________172____________________________________________________________________ 
 1ddh(A) : CDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLATDPPKAHVTHHRRPEGDVTLRCWALGFYPAEITLTWQLNGEELTQEMELVETRPAGDGT 
         :                                                                                                                          
 1vac(A) : CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 
           _________________________________________________172____________________________________________________________________ 

           __________________________________                                                                                       
 1ddh(A) : FQKWASVVVPLGKQQKYTCHVEHEGLPEPLTLRW                                                                                       
         :                                                                                                                          
 1vac(A) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRW                                                                                       
           __________________________________                                                                                       

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.4
Translation
(A) 		-0.9
Closure
(%) 		81.8
Bending Residues
( green ) 		  3 - 4
  172 - 180
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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