Phosphate-Binding Periplasmic Protein Precursor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphate-Binding Periplasmic Protein Precursor
  Conformer 1
(PDB) 		1a40 (A)
  Conformer 2
(PDB) 		1oib (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 166 0.65   77 - 227   240 - 254
2 151 1.01   3 - 76   228 - 239   255 - 319

Sequence


           _________________________________________________________________________75_____________________________________________ 
 1a40(A) : EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLN 
         :                                                                                                                          
 1oib(A) : EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLN 
           _________________________________________________________________________75_____________________________________________ 

           ________________________________________________________________________________________________________227_____________ 
 1a40(A) : PGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYWYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQD 
         :                                                                                                                          
 1oib(A) : PGLKLPSQNIAVVRRADGSGDSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQD 
           ________________________________________________________________________________________________________227_____________ 

           ___________254___________________________________________________________________                                        
 1a40(A) : LTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWKTNIKDSSGKPLY                                        
         :                                                                                                                          
 1oib(A) : LTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWKTNIKDSSGKPLY                                        
           ___________254___________________________________________________________________                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.3
Translation
(A) 		0.2
Closure
(%) 		99.5
Bending Residues
( green ) 		  75 - 77
  227 - 241
  254 - 255
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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