Sn-Glycerol-3-Phosphate-Binding Periplasmic Protein Ugpb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sn-Glycerol-3-Phosphate-Binding Periplasmic Protein Ugpb
  Conformer 1
(PDB) 		6x84 (A)
  Conformer 2
(PDB) 		4aq4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 231 1.15   100 - 101   120 - 282   347 - 412
2 180 0.68   2 - 99   102 - 119   283 - 346

Sequence


           _____________________________________________________________________________________________________99________________1 
 6x84(A) : ***SVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQ 
         :                                                                                                                          
 4aq4(A) : GSHMVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQ 
           _____________________________________________________________________________________________________99________________1 

           18______________________________________________________________________________________________________________________ 
 6x84(A) : PFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGSQGSIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKF 
         :                                                                                                                          
 4aq4(A) : PFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKF 
           18______________________________________________________________________________________________________________________ 

           ___________________________________________282________________________________________________________341_______________ 
 6x84(A) : YNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNK 
         :                                                                                                                          
 4aq4(A) : YNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNK 
           ___________________________________________282________________________________________________________341_______________ 

           ___________________________________________________________                                                              
 6x84(A) : PPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS                                                              
         :                                                                                                                          
 4aq4(A) : PPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTK*                                                              
           ___________________________________________________________                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.7
Translation
(A) 		0.2
Closure
(%) 		93.9
Bending Residues
( green ) 		  99 - 102
  118 - 120
  282 - 284
  341 - 347
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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