Thioredoxin Reductase (E.C.1.6.4.5)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Thioredoxin Reductase (E.C.1.6.4.5)
  Conformer 1
(PDB) 		1tde  
  Conformer 2
(PDB) 		1f6m (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 180 0.43   3 - 114   247 - 314
2 132 1.17   115 - 246

Sequence


           _____________________________________________________________________________________________________________112________ 
 1tde    : GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLG 
         :                                                                                                                          
 1f6m(E) : GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLG 
           _____________________________________________________________________________________________________________112________ 

           ________________________________________________________________________________________________________________________ 
 1tde    : LPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 
         :                                                                                                                          
 1f6m(E) : LPSEEAFKGRGVSASATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 
           ________________________________________________________________________________________________________________________ 

           __245___________________________________________________________________________                                         
 1tde    : VAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGL****                                         
         :                                                                                                                          
 1f6m(E) : VAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK                                         
           __245___________________________________________________________________________                                         

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		66.6
Translation
(A) 		-1.5
Closure
(%) 		0.2
Bending Residues
( green ) 		  112 - 115
  245 - 248
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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