Transesterase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transesterase
  Conformer 1
(PDB) 		3hlg (A)
  Conformer 2
(PDB) 		3hlc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 386 0.62   -9 - 111   128 - 144   149 - 149   151 - 174   180 - 410
2 26 0.47   112 - 127   145 - 148   150 - 150   175 - 179

Sequence


           _______________________________________________________________________________________________________________________1 
 3hlg(A) : HHSSGLVPRGSHMGSIIDAAAAAGPVVLMETAFRKAVESRQIPGAVIMARDASGNLNYTRCFGARTVRRDENNQLPPLQVDTPCRLAAATKLLTTIMVLQCMERGLVDLDETVDRLLPDL 
         :                                                                                                                          
 3hlc(A) : HHSSGLVPRGSHMGSIIDAAAAAGPVVLMETAFRKAVESRQIPGAVIMARDASGNLNYTRCFGARTVRRDENNQLPPLQVDTPCRLASATKLLTTIMVLQCMERGLVDLDETVDRLLPDL 
           _______________________________________________________________________________________________________________________1 

           10______________127______________144_148__________161_______________179_________________________________________________ 
 3hlg(A) : SAMPVLEGFDDAGNARLRERRGKITLRHLLTHTSGLSYVFLHPLLREYMAQGYLQSAEKFGIQSRLAPPAVNDPGAEWIYGTNLDWAGKLVERATGLDLEQYLQENICAPLGITDMTFKL 
         :                                                                                                                          
 3hlc(A) : SAMPVLEGFDDAGNARLRERRGKITLRHLLTHTSGLSYVFLHPLLREYMAQGYLQs--------RLAPPAVNDPGAEWIYGTNLDWAGKLVERATGLDLEQYLQENICAPLGITDMTFKL 
           10______________127______________144_148__________161_______________179_________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3hlg(A) : QQRPDMLARRADQTHRNSADGRLRYDDSVYFRADGEECFGGQGVFSSPGSYMKVLHSLLKRDGLLLQPQTVDLMFQPALEPRLEEQMNQHMDASPHINYGGPMPMVLRRSFGLGGIIALE 
         :                                                                                                                          
 3hlc(A) : QQRPDMLARRADQTHRNSADGRLRYDDSVYFRADGEECFGGQGVFSSPGSYMKVLHSLLKRDGLLLQPQTVDLMFQPALEPRLEEQMNQHMDASPHINYGGPMPMVLRRSFGLGGIIALE 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________                                                        
 3hlg(A) : DLDGENWRRKGSLTFGGGPNIVWQIDPKAGLCTLAFFQLEPWNDPVCRDLTRTFEHAIYAQYQQG                                                        
         :                                                                                                                          
 3hlc(A) : DLDGENWRRKGSLTFGGGPNIVWQIDPKAGLCTLAFFQLEPWNDPVCRDLTRTFEHAIYAQYQQ*                                                        
           _________________________________________________________________                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.1
Translation
(A) 		0.3
Closure
(%) 		51.6
Bending Residues
( green ) 		  110 - 112
  127 - 128
  144 - 145
  148 - 151
  161 - 175
  179 - 180
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download