Tryptophan Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophan Synthase
  Conformer 1
(PDB) 		1bks (B)
  Conformer 2
(PDB) 		1qop (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 271 0.31   6 - 32   44 - 45   52 - 86   88 - 92   97 - 99   115 - 115   188 - 385
2 109 0.4   33 - 43   46 - 51   87 - 87   93 - 96   100 - 114   116 - 187

Sequence


           _____________________________32________42_______51_________________________________86____92__96_99____________114_______ 
 1bks(B) : *TLLNPYFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASAL 
         :                                                                                                                          
 1qop(B) : TTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASAL 
           _____________________________32________42_______51_________________________________86____92__96_99____________114_______ 

           _______________________________________________________________187______________________________________________________ 
 1bks(B) : ASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 
         :                                                                                                                          
 1qop(B) : ASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 
           _______________________________________________________________187______________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1bks(B) : ADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKM 
         :                                                                                                                          
 1qop(B) : ADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKM 
           ________________________________________________________________________________________________________________________ 

           _________________________________                                                                                        
 1bks(B) : MREQPEKEQLLVVNLSGRGDKDIFTVHDILKAR                                                                                        
         :                                                                                                                          
 1qop(B) : MREQPEKEQLLVVNLSGRGDKDIFTVHDIL***                                                                                        
           _________________________________                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.6
Translation
(A) 		-0.1
Closure
(%) 		99.4
Bending Residues
( green ) 		  32 - 33
  42 - 46
  51 - 52
  86 - 88
  92 - 93
  96 - 97
  99 - 100
  114 - 116
  187 - 188
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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